Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu4220Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (291 aa)    
Predicted Functional Partners:
Atu4219
Cation efflux system protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  
 0.828
Atu4218
Multidrug efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.827
Atu4217
Transcriptional regulator, TetR family.
     
 0.725
fabG-4
3-oxoacyl-(acyl-carrier-protein) reductase.
  
 
   0.625
ditI
Short-chain dehydrogenase.
  
 
   0.579
Atu3074
Short chain dehydrogenase.
  
 
   0.538
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
  
  
 0.532
Atu2597
Short-chain dehydrogenase.
  
 
   0.517
fabG-5
3-oxoacyl-(acyl-carrier protein) reductase.
  
 
   0.505
Atu1897
Short chain dehydrogenase.
  
 
   0.497
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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