STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxD-2Sarcosine oxidase delta subunit. (91 aa)    
Predicted Functional Partners:
soxA-2
Sarcosine oxidase alpha subunit.
 
 0.999
Atu4221
Conserved hypothetical protein.
 
 0.996
soxB-2
Sarcosine oxidase beta subunit.
 
 0.994
soxA
Sarcosine oxidase alpha subunit.
 
 
 0.974
soxA-3
Sarcosine oxidase alpha subunit.
 
 
 0.974
purF-2
Amidophosphoribosyltransferase.
 
  
  0.944
fwdC
Formyl-methanofuran dehydrogenase.
 
  
  0.942
gltB-3
Glutamate synthase large subunit; Belongs to the glutamate synthase family.
 
  
  0.941
soxG
Sarcosine oxidase gamma subunit.
 
 
 0.936
fdhA
Glutathione-independent formaldehyde dehydrogenase.
 
 
  0.920
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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