Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
soxB-2Sarcosine oxidase beta subunit. (416 aa)    
Predicted Functional Partners:
soxA-2
Sarcosine oxidase alpha subunit.
 
 0.999
soxD-2
Sarcosine oxidase delta subunit.
 
 0.994
Atu4221
Conserved hypothetical protein.
 
  0.979
purF-2
Amidophosphoribosyltransferase.
 
  
  0.954
fwdC
Formyl-methanofuran dehydrogenase.
 
  
  0.953
gltB-3
Glutamate synthase large subunit; Belongs to the glutamate synthase family.
 
  
  0.950
soxA
Sarcosine oxidase alpha subunit.
 
 
 0.936
soxA-3
Sarcosine oxidase alpha subunit.
 
 
 0.931
fdhA
Glutathione-independent formaldehyde dehydrogenase.
   
 
  0.902
soxD
Sarcosine oxidase delta subunit.
 
 
 0.820
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.