Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glxATranscriptional regulator, AraC family. (324 aa)    
Predicted Functional Partners:
soxD-2
Sarcosine oxidase delta subunit.
 
    0.782
soxA-2
Sarcosine oxidase alpha subunit.
 
     0.780
soxB-2
Sarcosine oxidase beta subunit.
 
     0.764
Atu4221
Conserved hypothetical protein.
 
    0.686
Atu1081
Transcriptional regulator, AraC family.
  
   0.685
Atu4226
Transcriptional regulator.
 
    0.627
Atu1438
Transcriptional regulator, AraC family.
  
   0.619
Atu0410
Transcriptional regulator, AraC family.
  
   0.618
Atu0865
Transcriptional regulator, AraC family.
  
   0.571
Atu0239
Transcriptional regulator, AraC family.
  
   0.489
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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