STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fwdCFormyl-methanofuran dehydrogenase. (228 aa)    
Predicted Functional Partners:
gltB-3
Glutamate synthase large subunit; Belongs to the glutamate synthase family.
  0.999
purF-2
Amidophosphoribosyltransferase.
 
  0.997
soxB-2
Sarcosine oxidase beta subunit.
 
  
  0.953
soxA-2
Sarcosine oxidase alpha subunit.
 
  
  0.947
soxD-2
Sarcosine oxidase delta subunit.
 
  
  0.942
glnA-6
Glutamine synthetase III.
 
  
 0.905
gltD
Glutamate synthase, small subunit.
  
 
 0.904
Atu4226
Transcriptional regulator.
 
     0.886
gltB
Glutamate synthase large subunit.
  
   0.770
gltB-2
Glutamate synthase large subunit.
  
   0.770
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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