STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4232Transcriptional regulator, GntR family. (231 aa)    
Predicted Functional Partners:
Atu3961
Transcriptional regulator, GntR family.
  
     0.769
Atu3794
Transcriptional regulator, FadR/GntR family.
  
    0.763
Atu4674
Transcriptional regulator, GntR family.
  
     0.755
Atu3908
Transcriptional regulator, GntR family.
  
     0.748
Atu2740
Transcriptional regulator, GntR family.
  
    0.741
Atu4624
Transcriptional regulator, GntR family.
  
    0.728
Atu0271
Transcriptional regulator, GntR family.
  
    0.722
exuR
Transcriptional regulator, GntR family.
  
    0.715
Atu4243
ABC transporter, substrate binding protein (polyamine).
 
   
 0.660
Atu4718
Transcriptional regulator, GntR family.
  
    0.647
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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