Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu4234ABC transporter, membrane spanning protein (amino acid). (197 aa)    
Predicted Functional Partners:
Atu4235
ABC transporter, nucleotide binding/ATPase protein (amino acid).
  0.995
Atu1879
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
 
   0.975
Atu4233
ABC transporter, substrate binding protein (amino acid).
 
   0.884
Atu4283
ABC transporter, nucleotide binding/ATPase protein.
   0.862
Atu4752
ABC transporter, nucleotide binding/ATPase protein (amino acid).
   0.859
Atu3360
ABC transporter, nucleotide binding/ATPase protein (amino acid).
   0.855
Atu1396
ABC transporter, nucleotide binding/ATPase protein.
   0.854
Atu4533
ABC transporter, nucleotide binding/ATPase protein (amino acid).
   0.853
Atu4681
ABC transporter, nucleotide binding/ATPase protein (amino acid).
   0.851
Atu4690
ABC transporter, nucleotide binding/ATPase protein (amino acid).
   0.850
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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