STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4235ABC transporter, nucleotide binding/ATPase protein (amino acid). (243 aa)    
Predicted Functional Partners:
Atu4234
ABC transporter, membrane spanning protein (amino acid).
  0.995
Atu3245
ABC transporter, substrate binding protein (amino acid).
 
  0.956
Atu4282
ABC transporter, membrane spanning protein (amino acid).
 
 0.854
Atu3359
ABC transporter, membrane spanning protein (amino acid).
 
 
 0.849
Atu4281
ABC transporter, membrane spanning protein (amino acid).
   0.844
Atu3358
ABC transporter, membrane spanning protein (amino acid).
 
   0.841
Atu4537
ABC transporter, membrane spanning protein (amino acid).
   0.830
Atu4536
ABC transporter, membrane spanning protein (amino acid).
   0.824
Atu1397
ABC transporter, membrane spanning protein (amino acid).
   0.821
Atu4754
ABC transporter, membrane spanning protein (amino acid).
   0.816
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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