STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4236Dehydrogenase. (392 aa)    
Predicted Functional Partners:
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.586
adhC
Alcohol dehydrogenase class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
   
 
 0.580
adhC-2
Alcohol dehydrogenase.
   
 
 0.580
dhaS
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.578
Atu4238
Hydrolase.
 
   
 0.559
Atu4235
ABC transporter, nucleotide binding/ATPase protein (amino acid).
       0.553
Atu4239
Flavoprotein oxidoreductase.
  
    0.525
Atu2139
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.520
Atu4234
ABC transporter, membrane spanning protein (amino acid).
  
    0.514
Atu4237
Conserved hypothetical protein.
       0.505
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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