STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4238Hydrolase. (281 aa)    
Predicted Functional Partners:
Atu4239
Flavoprotein oxidoreductase.
  
 0.952
Atu4240
Alkanal monooxygenase alpha chain.
 
    0.948
Atu4237
Conserved hypothetical protein.
 
     0.938
dhaS
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
    0.854
Atu4242
Conserved hypothetical protein.
 
     0.809
Atu4243
ABC transporter, substrate binding protein (polyamine).
 
     0.802
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.604
Atu4245
ABC transporter, membrane spanning protein (polyamine).
 
     0.584
Atu4236
Dehydrogenase.
 
   
 0.559
Atu4246
ABC transporter, nucleotide binding/ATPase protein (polyamine); Belongs to the ABC transporter superfamily.
 
     0.548
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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