Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu4240Alkanal monooxygenase alpha chain. (346 aa)    
Predicted Functional Partners:
Atu4238
Hydrolase.
 
  
 0.954
Atu4237
Conserved hypothetical protein.
 
     0.943
Atu4239
Flavoprotein oxidoreductase.
 
    0.942
dhaS
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.932
Atu4243
ABC transporter, substrate binding protein (polyamine).
 
    0.876
Atu4242
Conserved hypothetical protein.
       0.788
Atu0457
Conserved hypothetical protein.
  
     0.665
Atu4245
ABC transporter, membrane spanning protein (polyamine).
 
     0.650
Atu4244
ABC transporter, membrane spanning protein (polyamine).
 
     0.578
Atu4246
ABC transporter, nucleotide binding/ATPase protein (polyamine); Belongs to the ABC transporter superfamily.
 
     0.562
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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