STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4243ABC transporter, substrate binding protein (polyamine). (336 aa)    
Predicted Functional Partners:
Atu4245
ABC transporter, membrane spanning protein (polyamine).
 
  
 0.949
Atu4244
ABC transporter, membrane spanning protein (polyamine).
 
  
 0.929
Atu4240
Alkanal monooxygenase alpha chain.
 
    0.874
Atu4246
ABC transporter, nucleotide binding/ATPase protein (polyamine); Belongs to the ABC transporter superfamily.
 
  
 0.860
Atu4237
Conserved hypothetical protein.
 
     0.849
Atu4238
Hydrolase.
 
     0.802
Atu4239
Flavoprotein oxidoreductase.
 
     0.747
dhaS
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.681
Atu4232
Transcriptional regulator, GntR family.
 
   
 0.660
Atu3087
ABC transporter, membrane spanning protein (spermidine/putrescine).
 
  
 0.608
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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