STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
attKAldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (484 aa)    
Predicted Functional Partners:
sdhA
Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 0.915
sdhB
Succinate dehydrogenase iron-sulfur; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.911
Atu3498
Aldehyde dehydrogenase.
  
  
 
0.909
Atu1014
Aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.908
Atu0396
Coenzyme A transferase.
  
 
 0.907
sdhC
Succinate dehydrogenase cytochrome B-556 subunit.
   
 
  0.905
caiB
L-carnitine dehydratase; Belongs to the CoA-transferase III family.
   
 0.903
sdhD
Succinate dehydrogenase hydrophobic membrane anchor.
   
 
 0.903
attK2
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.902
Atu3300
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.900
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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