STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4254Transcriptional regulator, LacI family. (352 aa)    
Predicted Functional Partners:
Atu4253
Conserved hypothetical protein.
 
 
 
 0.930
Atu4252
ABC transporter, substrate binding protein (sugar).
 
     0.889
purR
Transcriptional regulator, LacI family.
  
     0.769
Atu4420
Transcriptional regulator, LacI family.
  
     0.762
Atu4685
Transcriptional regulator, LacI family.
  
     0.761
thuR
Transcriptional regulator, LacI family.
  
     0.754
Atu1522
Transcriptional regulator, LacI family.
  
     0.731
Atu3162
Transcriptional regulator, LacI family.
  
     0.711
Atu4250
ABC transporter, membrane spanning protein (sugar).
 
     0.678
Atu4743
Transcriptional regulator, LacI family.
  
     0.669
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.