STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4261ABC transporter, nucleotide binding/ATPase protein. (273 aa)    
Predicted Functional Partners:
Atu4260
ABC transporter, membrane spanning protein.
 
  
 0.964
Atu4262
ABC transporter, substrate binding protein.
 
  
 0.957
Atu0158
ABC transporter, membrane spanning protein.
 
  
 0.797
nrtB
ABC transporter, membrane spanning protein (nitrate).
 
  
 0.787
Atu4155
ABC transporter, membrane spanning protein (aliphatic sulphonate).
  
 0.719
Atu4597
ABC transporter, membrane spanning protein.
  
 0.711
Atu1048
ABC transporter, membrane spanning protein.
  
 0.704
Atu3286
ABC transporter, membrane spanning protein.
  
 0.615
Atu0157
ABC transporter, substrate binding protein.
 
  
 0.584
Atu4402
ABC transporter, membrane spanning protein (anion).
 
  
 0.580
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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