close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4280Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (259 aa)    
Predicted Functional Partners:
Atu4281
ABC transporter, membrane spanning protein (amino acid).
    0.863
Atu4282
ABC transporter, membrane spanning protein (amino acid).
 
    0.834
Atu4284
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
 
   0.819
Atu4283
ABC transporter, nucleotide binding/ATPase protein.
 
    0.804
nac
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.745
ditI
Short-chain dehydrogenase.
  
    0.726
Atu0990
NAD/NADP dependent oxidoreductase.
  
    0.665
menG
S-adenosylmethionine:2-demethylmenaquinone methyltransferase.
 
     0.633
Atu3164
Dehydrogenase; Involved in galactitol catabolism. Catalyzes the oxidation of galactitol to D-tagatose. Can also catalyze the oxidation of D-sorbitol to D-fructose.
 
    0.549
Atu3704
Conserved hypothetical protein.
  
     0.466
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.