STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4288Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
Atu3355
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.752
Atu4437
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.733
Atu4021
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.731
Atu4411
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.705
Atu3440
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.680
nac
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.671
gbpR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.638
Atu4287
NonF-related protein.
 
     0.559
Atu3381
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.544
pcaQ
Transcriptional regulator, LysR family; Activates transcription of the pcaDCHGB operon for the catabolism of the phenolic compound protocatechuate.
  
     0.481
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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