Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
adhC-2Alcohol dehydrogenase. (312 aa)    
Predicted Functional Partners:
Atu1476
Esterase D; Serine hydrolase involved in the detoxification of formaldehyde.
 
 0.927
Atu2002
Esterase/lipase.
  
 
 0.733
Atu0890
Conserved hypothetical protein.
  
  
 0.690
Atu4290
Hypothetical protein.
       0.563
Atu2138
Dehydrogenase.
    
 
 0.485
macA
Maleylacetate reductase.
    
 
 0.485
Atu4236
Dehydrogenase.
    
 
 0.485
Atu4870
NADP-dependent quinone oxidoreductase.
  
  
 0.473
codA
Cytidine and deoxycytidylate deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.448
Atu1453
Conserved hypothetical protein.
  
    0.448
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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