Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yafBOxidoreductase. (277 aa)    
Predicted Functional Partners:
Atu4293
Monooxygenase.
       0.737
Atu4292
Chloramphenicol resistance protein.
 
     0.613
Atu4868
Putative oxidoreductase.
 
 
 0.603
Atu3438
Putative oxidoreductase.
 
 
0.488
Atu0263
Oxidoreductase.
 
 
0.482
Atu1093
Aldo/keto reductase.
 
 
0.453
Atu4876
Putative oxidoreductase.
 
 
0.447
Atu3877
Aldo-keto reductase.
 
 
0.422
Atu3811
Hydrolase.
   
    0.407
Atu3980
Hydrolase.
   
    0.407
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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