STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsA-4ABC transporter, nucleotide binding/ATPase protein (ribose). (500 aa)    
Predicted Functional Partners:
rbsC-5
ABC transporter, membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family.
   0.947
rbsB-4
ABC transporter, substrate binding protein (ribose).
 
   0.845
rbsC-4
ABC transporter, membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family.
 
   0.727
rbsC
ABC transporter, membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family.
 
   0.723
rbsC-2
ABC transporter, membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family.
 
   0.715
Atu3370
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
   0.704
rbsC-3
ABC transporter, membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family.
 
   0.700
Atu3879
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
   0.690
rdh
Ribitol 2-dehydrogenase.
       0.668
Atu3535
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
   0.659
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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