STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsC-5ABC transporter, membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family. (325 aa)    
Predicted Functional Partners:
rbsA-4
ABC transporter, nucleotide binding/ATPase protein (ribose).
   0.947
rbsB-4
ABC transporter, substrate binding protein (ribose).
   0.923
rbsB-3
ABC transporter, substrate binding protein (ribose).
 
   0.830
rbsB
ABC transporter, substrate binding protein (ribose).
 
   0.826
Atu4552
ABC transporter, substrate binding protein.
 
   0.810
Atu3372
ABC transporter, substrate binding protein (sugar).
 
   0.785
rbsB-2
ABC transporter, substrate binding protein (ribose).
 
   0.782
rbsA-2
ABC transporter, nucleotide binding/ATPase protein (ribose); Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Carbohydrate importer 2 (CUT2) (TC 3.A.1.2) family.
 
   0.774
Atu3063
ABC transporter, nucleotide binding/ATPase protein.
 
   0.773
Atu4551
ABC transporter, substrate binding protein.
 
   0.761
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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