Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
impJConserved hypothetical protein. (446 aa)    
Predicted Functional Partners:
impK
OmpA-like porin.
 
  
 0.992
impL
IcmF family protein.
 
  
 0.985
impM
Serine/threonine phosphoprotein phosphatase.
 
  
 0.974
impB
Conserved hypothetical protein.
 
  
 0.973
impG
Conserved hypothetical protein.
 
  
 0.972
impD
Conserved hypothetical protein.
 
  
 0.972
impF
Conserved hypothetical protein.
 
  
 0.971
impI
Putative forkhead-type phosphopeptide-binding protein.
 
  
 0.970
impH
Conserved hypothetical protein.
 
  
 0.969
impE
Hypothetical protein.
 
    0.969
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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