Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
impBConserved hypothetical protein. (169 aa)    
Predicted Functional Partners:
impC
Conserved hypothetical protein.
 
 0.999
impD
Conserved hypothetical protein.
 
 0.998
impE
Hypothetical protein.
 
 
 0.992
impK
OmpA-like porin.
 
  
 0.990
Atu4345
Conserved hypothetical protein.
 
 
 0.984
impJ
Conserved hypothetical protein.
 
  
 0.973
impA
Conserved hypothetical protein.
 
  
 0.968
impG
Conserved hypothetical protein.
 
  
 0.959
impM
Serine/threonine phosphoprotein phosphatase.
 
  
 0.955
impF
Conserved hypothetical protein.
 
  
 0.943
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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