STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clpB-2ATP-dependent Clp protease, ATP-binding subunit; Belongs to the ClpA/ClpB family. (892 aa)    
Predicted Functional Partners:
impA
Conserved hypothetical protein.
 
  
 0.940
vgrG-2
VgrG protein.
 
  
 0.929
Atu4345
Conserved hypothetical protein.
 
  
 0.921
dnaK
DNAK Protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.902
impB
Conserved hypothetical protein.
 
  
 0.895
impC
Conserved hypothetical protein.
 
 
 0.894
impD
Conserved hypothetical protein.
 
 
 0.889
vgrG
vgrG protein.
 
  
 0.886
impM
Serine/threonine phosphoprotein phosphatase.
 
  
 0.883
impK
OmpA-like porin.
 
  
 0.875
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.