STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vgrG-2VgrG protein. (816 aa)    
Predicted Functional Partners:
Atu4352
Hypothetical protein.
 
   
 0.953
impA
Conserved hypothetical protein.
 
  
 0.923
impB
Conserved hypothetical protein.
 
  
 0.920
impL
IcmF family protein.
 
  
 0.915
impK
OmpA-like porin.
 
  
 0.911
impC
Conserved hypothetical protein.
 
  
 0.909
impE
Hypothetical protein.
 
  
 0.908
Atu4345
Conserved hypothetical protein.
 
  
 0.907
impM
Serine/threonine phosphoprotein phosphatase.
 
  
 0.905
clpB-2
ATP-dependent Clp protease, ATP-binding subunit; Belongs to the ClpA/ClpB family.
 
  
 0.902
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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