Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
thuR-2Transcriptional regulator, LacI family. (354 aa)    
Predicted Functional Partners:
Atu4363
Conserved hypothetical protein.
 
     0.791
Atu4362
Conserved hypothetical protein.
 
    0.772
Atu3162
Transcriptional regulator, LacI family.
  
     0.764
gltB
Glutamate synthase large subunit.
    
 
 0.694
gltB-2
Glutamate synthase large subunit.
    
 
 0.694
Atu4743
Transcriptional regulator, LacI family.
  
     0.689
Atu4361
ABC transporter, substrate binding protein (sugar).
 
     0.550
ptsH
Phosphocarrier protein HPr.
   
 
 0.454
Atu4359
ABC transporter, membrane spanning protein (sugar).
 
     0.415
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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