STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cytRTranscriptional repressor, LacI family. (340 aa)    
Predicted Functional Partners:
Atu4371
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
    0.822
rbsC-6
ABC transporter, membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family.
 
    0.819
Atu4370
ABC transporter, nucleotide binding/ATPase protein (sugar).
  
    0.789
Atu4743
Transcriptional regulator, LacI family.
  
     0.752
Atu4374
Conserved hypothetical protein.
  
    0.667
Atu4375
Conserved hypothetical protein.
       0.643
rbsB-5
ABC transporter, substrate binding protein (sugar).
 
    0.635
gltB
Glutamate synthase large subunit.
    
 
 0.587
gltB-2
Glutamate synthase large subunit.
    
 
 0.587
Atu4376
Conserved hypothetical protein.
 
    0.482
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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