STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4374Conserved hypothetical protein. (349 aa)    
Predicted Functional Partners:
Atu4375
Conserved hypothetical protein.
 
    0.956
Atu3234
NAD binding oxidoreductase.
 
    0.830
Atu4377
Oxidoreductase.
 
     0.800
Atu4378
Conserved hypothetical protein.
 
     0.734
Atu4376
Conserved hypothetical protein.
 
     0.724
Atu4371
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
  
    0.671
rbsC-6
ABC transporter, membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family.
  
    0.671
cytR
Transcriptional repressor, LacI family.
  
    0.667
Atu4370
ABC transporter, nucleotide binding/ATPase protein (sugar).
  
    0.666
iolD
Acetolactate synthase; Belongs to the TPP enzyme family.
  
  
 0.513
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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