STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4374Conserved hypothetical protein. (349 aa)    
Predicted Functional Partners:
Atu4375
Conserved hypothetical protein.
 
    0.945
Atu4377
Oxidoreductase.
 
     0.800
Atu3234
NAD binding oxidoreductase.
 
    0.791
Atu4378
Conserved hypothetical protein.
 
     0.735
Atu4376
Conserved hypothetical protein.
 
     0.724
Atu4371
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
  
    0.671
rbsC-6
ABC transporter, membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family.
  
    0.671
cytR
Transcriptional repressor, LacI family.
  
    0.668
Atu4370
ABC transporter, nucleotide binding/ATPase protein (sugar).
  
    0.664
rbsB-5
ABC transporter, substrate binding protein (sugar).
  
    0.458
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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