STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4383Conserved hypothetical protein. (410 aa)    
Predicted Functional Partners:
nirK
Nitrite reductase, copper-containing; Belongs to the multicopper oxidase family.
 
     0.732
Atu4396
Conserved hypothetical protein.
 
     0.706
norB
Nitric oxide reductase, cytochrome b subunit.
 
  
 0.700
Atu4398
Conserved hypothetical protein.
 
    0.681
norC
Nitric oxide reductase, cytochrome c-containing subunit.
 
  
 0.658
nnrR
Transcriptional regulatory, Crp family.
 
   
 0.646
norD
Nitric oxide reductase NorD protein.
 
    0.617
Atu4397
Protease.
 
    0.599
nnrU
Denitrification regulatory protein.
 
    0.595
nirV
Nitrite reductase, NirV precursor.
 
     0.576
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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