STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4384Conserved hypothetical protein. (177 aa)    
Predicted Functional Partners:
Atu4385
Conserved hypothetical protein.
 
     0.888
nifS-2
Cysteine desulfurase.
   
 
 0.737
Atu0257
Conserved hypothetical protein.
  
     0.665
norD
Nitric oxide reductase NorD protein.
 
     0.638
Atu1913
Hypothetical protein.
  
     0.589
Atu3467
Conserved hypothetical protein.
 
  
 0.564
Atu3468
Conserved hypothetical protein.
 
  
 0.554
Atu2303
Conserved hypothetical protein.
  
     0.540
Atu4396
Conserved hypothetical protein.
  
     0.451
Atu8167
Putative transmembrane protein.
  
     0.451
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.