STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
norDNitric oxide reductase NorD protein. (632 aa)    
Predicted Functional Partners:
norQ
Nitric oxide reductase NorQ protein.
 
  
 0.984
norB
Nitric oxide reductase, cytochrome b subunit.
 
  
 0.977
norC
Nitric oxide reductase, cytochrome c-containing subunit.
 
  
 0.973
Atu4385
Conserved hypothetical protein.
 
     0.821
norE
Nitric oxide reductase NorE protein.
 
  
 0.768
nirV
Nitrite reductase, NirV precursor.
 
   
 0.759
nirK
Nitrite reductase, copper-containing; Belongs to the multicopper oxidase family.
 
   
 0.680
cobS-2
Cobalamin biosynthesis protein.
  
  
 0.673
napC
Periplasmic nitrate reductase, cytochrome c-type protein.
  
   
 0.644
norF
NorF protein.
     
 0.640
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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