Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
norDNitric oxide reductase NorD protein. (632 aa)    
Predicted Functional Partners:
norQ
Nitric oxide reductase NorQ protein.
 
 
 0.997
norB
Nitric oxide reductase, cytochrome b subunit.
 
  
 0.988
norC
Nitric oxide reductase, cytochrome c-containing subunit.
 
  
 0.982
cobS-2
Cobalamin biosynthesis protein.
  
 
 0.882
Atu4385
Conserved hypothetical protein.
 
     0.820
moxR
MoxR family protein.
  
 
 0.795
nirK
Nitrite reductase, copper-containing; Belongs to the multicopper oxidase family.
 
   
 0.778
norE
Nitric oxide reductase NorE protein.
 
  
 0.775
nirV
Nitrite reductase, NirV precursor.
 
     0.674
Atu4383
Conserved hypothetical protein.
 
  
 0.651
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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