Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu4400Ferrienterobactin-like protein. (717 aa)    
Predicted Functional Partners:
Atu4401
Conserved hypothetical protein.
 
     0.894
Atu4404
Conserved hypothetical protein.
 
    0.851
Atu4402
ABC transporter, membrane spanning protein (anion).
 
  
 0.833
tonB
tonB protein.
  
 
 0.778
tolA
Conserved hypothetical protein.
  
 
 0.778
Atu4403
ABC transporter, nucleotide binding/ATPase protein (anion).
 
     0.764
Atu3276
Conserved hypothetical protein.
  
 
 
 0.725
fecR
Two component sensor kinase.
 
  
 0.595
napC
Periplasmic nitrate reductase, cytochrome c-type protein.
 
     0.592
Atu4398
Conserved hypothetical protein.
 
     0.586
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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