STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4403ABC transporter, nucleotide binding/ATPase protein (anion). (250 aa)    
Predicted Functional Partners:
Atu4402
ABC transporter, membrane spanning protein (anion).
 
  
 0.937
Atu4401
Conserved hypothetical protein.
 
  
 0.876
Atu4404
Conserved hypothetical protein.
 
     0.819
Atu4400
Ferrienterobactin-like protein.
 
     0.764
nrtB
ABC transporter, membrane spanning protein (nitrate).
 
  
 0.599
Atu0158
ABC transporter, membrane spanning protein.
 
  
 0.582
ccmA
ABC transporter, nucleotide binding/ATPase protein (heme); Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.
  
     0.579
Atu4597
ABC transporter, membrane spanning protein.
 
  
 0.546
Atu1048
ABC transporter, membrane spanning protein.
 
  
 0.543
Atu4260
ABC transporter, membrane spanning protein.
 
  
 0.542
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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