STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4416Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily. (238 aa)    
Predicted Functional Partners:
Atu3672
Polyketide synthase, siderophore biosynthesis protein.
 
 
 0.943
acpS
Holo-(acyl-carrier Protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
     
 0.915
fabD
malonyl-CoA:acyl carrier protein transacylase.
     
  0.900
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
 
 
 0.896
Atu3683
Peptide synthetase, siderophore biosynthesis protein.
 
 
 0.815
Atu3682
Non-ribosomal peptide synthetase, siderophore biosynthesis protein.
 
 
 0.794
Atu3681
Polyketide synthetase, siderophore biosynthesis protein.
 
 
 
 0.703
Atu3670
Siderophore biosynthesis protein.
 
 
 0.679
Atu3673
Siderophore biosynthesis protein.
 
 
 0.611
exoZ
Exopolysaccharide production protein.
  
   
 0.545
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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