STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4420Transcriptional regulator, LacI family. (353 aa)    
Predicted Functional Partners:
Atu4421
ABC transporter, substrate binding protein (spermidine/putrescine).
 
     0.850
Atu4254
Transcriptional regulator, LacI family.
  
     0.762
Atu1522
Transcriptional regulator, LacI family.
  
     0.753
iunH-3
Inosine-uridine preferring nucleoside hydrolase.
 
   
 0.624
gltB
Glutamate synthase large subunit.
    
 
 0.587
gltB-2
Glutamate synthase large subunit.
    
 
 0.587
Atu4423
ABC transporter, membrane spanning protein.
 
     0.577
Atu4422
ABC transporter, membrane spanning protein (spermidine/putrescine).
 
     0.565
Atu4424
ABC transporter, nucleotide binding/ATPase protein (spermidine/putrescine).
 
     0.539
adeC-2
Adenine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
  
    0.503
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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