Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu4424ABC transporter, nucleotide binding/ATPase protein (spermidine/putrescine). (341 aa)    
Predicted Functional Partners:
Atu4422
ABC transporter, membrane spanning protein (spermidine/putrescine).
 
 0.998
Atu4423
ABC transporter, membrane spanning protein.
 
 
 0.983
Atu4421
ABC transporter, substrate binding protein (spermidine/putrescine).
 
 0.981
iunH-3
Inosine-uridine preferring nucleoside hydrolase.
 
     0.907
adeC-2
Adenine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
 
    0.902
Atu4570
ABC transporter, membrane spanning protein.
 
 
 0.845
Atu4571
ABC transporter, membrane spanning protein.
 
 
 0.835
Atu4244
ABC transporter, membrane spanning protein (polyamine).
 
 
 0.731
Atu4245
ABC transporter, membrane spanning protein (polyamine).
 
 
 0.705
Atu3086
ABC transporter, membrane spanning protein (spermidine/putrescine).
 
 
 0.693
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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