STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4430Dipeptidase. (351 aa)    
Predicted Functional Partners:
Atu4431
ABC transporter, substrate binding protein (oligopeptide).
 
     0.814
Atu3369
Conserved hypothetical protein.
      0.752
Atu4432
ABC transporter, membrane spanning protein (oligopeptide).
 
     0.718
Atu4433
ABC transporter, membrane spanning protein (oligopeptide).
 
     0.701
Atu4435
ABC transporter, nucleotide binding/ATPase protein (oligopeptide).
 
     0.676
Atu4434
ABC transporter, nucleotide binding/ATPase protein (oligopeptide).
 
    0.675
Atu0164
Putative malate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.580
Atu4676
Putative malate dehydrogenase; Catalyzes the reduction of Delta(1)-pyrroline-2-carboxylate (Pyr2C) to L-proline, using NADPH as the electron donor. Is likely involved in a degradation pathway that converts trans-3-hydroxy-L- proline (t3LHyp) to L-proline, which would allow A.tumefaciens to grow on t3LHyp as a sole carbon source; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.580
Atu4429
Phosphoribosyltransferase.
     
 0.487
dppA
ABC transporter, substrate binding protein (dipeptide).
 
     0.407
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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