Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu4438ABC transporter, substrate binding protein (oligopeptide). (511 aa)    
Predicted Functional Partners:
Atu4439
ABC transporter, membrane spanning protein (oligopeptide).
   0.906
Atu4440
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.900
dppC-5
ABC transporter, membrane spanning protein (dipeptide).
  
   0.589
dppB-5
ABC transporter, membrane spanning protein (dipeptide).
  
   0.588
Atu4433
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.545
Atu4432
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.534
Atu3378
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.533
Atu3442
ABC transporter, substrate binding protein (oligopeptide).
  
  
 
0.529
Atu1202
ABC transporter, substrate binding protein.
  
  
 
0.522
Atu3444
ABC transporter, substrate binding protein (oligopeptide).
  
  
 
0.522
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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