STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4438ABC transporter, substrate binding protein (oligopeptide). (511 aa)    
Predicted Functional Partners:
Atu4440
ABC transporter, membrane spanning protein (oligopeptide).
 
   0.890
Atu4439
ABC transporter, membrane spanning protein (oligopeptide).
   0.884
dppB-5
ABC transporter, membrane spanning protein (dipeptide).
 
   0.556
dppC-5
ABC transporter, membrane spanning protein (dipeptide).
  
   0.556
Atu3442
ABC transporter, substrate binding protein (oligopeptide).
  
  
 
0.529
Atu1202
ABC transporter, substrate binding protein.
  
  
 
0.522
Atu3444
ABC transporter, substrate binding protein (oligopeptide).
  
  
 
0.522
ugpE-3
ABC transporter, membrane spanning protein (glycerol-3-phosphate); Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Probably responsible for the translocation of the substrate across the membrane (By similarity).
  
  
  0.517
Atu4431
ABC transporter, substrate binding protein (oligopeptide).
 
  
 
0.517
Atu3041
ABC transporter, substrate binding protein (dipeptide).
  
  
 
0.509
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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