STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4439ABC transporter, membrane spanning protein (oligopeptide). (316 aa)    
Predicted Functional Partners:
Atu4440
ABC transporter, membrane spanning protein (oligopeptide).
 
  0.998
Atu4438
ABC transporter, substrate binding protein (oligopeptide).
   0.906
dppC
ABC transporter, membrane spanning protein.
  
 
 0.853
Atu3378
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.851
Atu3267
ABC transporter, membrane spanning protein (dipeptide).
  
   0.850
Atu4523
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.850
dppC-5
ABC transporter, membrane spanning protein (dipeptide).
  
   0.849
Atu3037
ABC transporter, membrane spanning protein (dipeptide).
  
 
 0.848
Atu3214
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.848
Atu3435
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.846
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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