Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Atu4446Conserved hypothetical protein. (317 aa)    
Predicted Functional Partners:
Atu4447
ABC transporter, substrate binding protein (sorbitol).
 
     0.813
Atu4448
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
   
 0.809
Atu4449
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
   
 0.788
Atu3168
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
   
 0.679
Atu3169
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
   
 0.655
mtlK
Mannitol 2-dehydrogenase.
 
   
 0.631
Atu3165
ABC transporter, substrate binding protein (sorbitol/mannitol).
 
     0.623
Atu4450
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
 
     0.502
Atu4452
Conserved hypothetical protein.
 
     0.423
Atu4445
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
       0.407
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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