STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4447ABC transporter, substrate binding protein (sorbitol). (437 aa)    
Predicted Functional Partners:
Atu4448
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
  0.989
Atu4449
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
  0.989
Atu4450
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
 
  0.971
Atu3169
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
  0.970
Atu3168
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
  0.968
Atu3170
ABC transporter, nucleotide binding/ATPase protein (sorbitol/mannitol).
 
  0.923
thuK
ABC transporter, nucleotide binding/ATPase protein (trehalose/maltose).
  
  0.883
Atu0391
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
   
  0.864
Atu1401
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
   
  0.864
Atu2508
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
   
  0.864
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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