Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
Atu4447ABC transporter, substrate binding protein (sorbitol). (437 aa)    
Predicted Functional Partners:
Atu4448
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
  0.989
Atu4449
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
 0.989
Atu4450
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
 
  0.972
Atu3168
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
  0.970
Atu3169
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
 0.970
Atu3170
ABC transporter, nucleotide binding/ATPase protein (sorbitol/mannitol).
 
  0.925
Atu3165
ABC transporter, substrate binding protein (sorbitol/mannitol).
  
  
 
0.902
thuK
ABC transporter, nucleotide binding/ATPase protein (trehalose/maltose).
  
  0.884
Atu0391
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
   
  0.864
Atu1401
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
   
  0.864
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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