Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
mtlKMannitol 2-dehydrogenase. (494 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.939
scrK
Fructokinase.
 
  
 0.935
Atu4452
Conserved hypothetical protein.
     0.927
Atu3251
Haloacid dehalogenase-like hydrolase.
 
  
  0.913
Atu4449
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
  
 0.868
Atu4448
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
    0.860
Atu4447
ABC transporter, substrate binding protein (sorbitol).
 
    0.842
Atu3169
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
  
 0.758
Atu3168
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
    0.749
Atu3165
ABC transporter, substrate binding protein (sorbitol/mannitol).
 
    0.722
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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