STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtlKMannitol 2-dehydrogenase. (494 aa)    
Predicted Functional Partners:
scrK
Fructokinase.
 
  
 0.931
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.917
Atu3251
Haloacid dehalogenase-like hydrolase.
 
  
 0.916
Atu4452
Conserved hypothetical protein.
   
 0.878
Atu4449
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
  
 0.850
Atu4447
ABC transporter, substrate binding protein (sorbitol).
 
    0.841
Atu4448
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
    0.838
Atu3169
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
  
 0.723
Atu3165
ABC transporter, substrate binding protein (sorbitol/mannitol).
 
    0.721
Atu3168
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
    0.709
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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