STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4454Transcriptional regulator, RpiR family. (265 aa)    
Predicted Functional Partners:
Atu3568
Conserved hypothetical protein.
  
     0.708
Atu3424
Hypothetical protein.
  
     0.698
Atu0480
Polysaccharide biosynthesis protein.
  
     0.688
Atu3557
Conserved hypothetical protein.
  
     0.653
Atu4568
ABC transporter, substrate binding protein.
  
     0.644
Atu3549
Conserved hypothetical protein.
 
     0.639
exoH
Succinoglycan biosynthesis protein.
  
     0.617
Atu1710
Conserved hypothetical protein.
  
    0.578
Atu3553
Hypothetical protein.
  
     0.566
Atu2166
Conserved hypothetical protein.
  
     0.562
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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