STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4456Conserved hypothetical protein. (245 aa)    
Predicted Functional Partners:
Atu1373
Conserved hypothetical protein.
  
     0.617
Atu1160
Conserved hypothetical protein.
  
     0.606
Atu3602
Conserved hypothetical protein.
  
     0.548
tolA
Conserved hypothetical protein.
  
     0.537
Atu2681
Conserved hypothetical protein.
  
     0.535
Atu3194
Acetyltransferase.
  
     0.535
Atu0730
Conserved hypothetical protein.
  
     0.524
Atu8118
Putative universal stress protein.
  
     0.513
Atu1162
Conserved hypothetical protein.
  
     0.502
Atu0728
Conserved hypothetical protein.
  
     0.480
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.