STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgR-2Transcriptional regulator. (255 aa)    
Predicted Functional Partners:
Atu3912
Conserved hypothetical protein.
  
    0.871
Atu4466
Oxidoreductase.
 
    0.661
kdgR
Transcriptional regulator, IclR family.
  
     0.623
Atu4599
Transcriptional regulator, IclR family.
  
     0.535
Atu2812
Conserved hypothetical protein.
 
    0.515
Atu4275
Conserved hypothetical protein.
  
    0.488
Atu3527
Conserved hypothetical protein.
 
    0.479
Atu3814
Conserved hypothetical protein.
 
    0.476
Atu2815
Conserved hypothetical protein.
 
    0.471
exuR
Transcriptional regulator, GntR family.
  
  
 0.460
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.