Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kdgR-2Transcriptional regulator. (255 aa)    
Predicted Functional Partners:
Atu3912
Conserved hypothetical protein.
  
    0.886
Atu4466
Oxidoreductase.
 
     0.747
kdgR
Transcriptional regulator, IclR family.
  
     0.623
Atu4275
Conserved hypothetical protein.
  
    0.538
Atu4599
Transcriptional regulator, IclR family.
  
     0.535
Atu4276
Conserved hypothetical protein.
  
    0.528
exuR
Transcriptional regulator, GntR family.
  
  
 0.462
Atu3527
Conserved hypothetical protein.
 
     0.452
Atu2815
Conserved hypothetical protein.
 
     0.444
Atu3911
Conserved hypothetical protein; Belongs to the D-glutamate cyclase family.
  
    0.435
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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