STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu4467Conserved hypothetical protein. (57 aa)    
Predicted Functional Partners:
Atu4724
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.805
Atu8096
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.735
Atu0782
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.677
Atu3080
Conserved hypothetical protein.
  
    0.518
sitD
ABC transporter, membrane spanning protein (iron transport).
       0.441
sitC
ABC transporter, membrane spanning protein (iron).
       0.441
sitB
ABC transporter, nucleotide binding/ATPase protein (iron).
       0.441
sitA
ABC transporter, substrate binding protein (iron); Belongs to the bacterial solute-binding protein 9 family.
       0.441
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.