STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sitCABC transporter, membrane spanning protein (iron). (286 aa)    
Predicted Functional Partners:
sitA
ABC transporter, substrate binding protein (iron); Belongs to the bacterial solute-binding protein 9 family.
 
 0.999
sitB
ABC transporter, nucleotide binding/ATPase protein (iron).
 
 0.998
sitD
ABC transporter, membrane spanning protein (iron transport).
 
  
 
0.989
Atu3180
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.928
znuC
ABC transporter, nucleotide binding/ATPase protein (zinc); Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
 
 0.901
Atu3178
ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
 0.901
znuA
ABC transporter, substrate binding protein (zinc).
 
  
 0.815
Atu1049
Conserved hypothetical protein.
  
  
 0.607
Atu3179
ABC transporter, membrane spanning protein.
  
  
 
0.514
znuB
ABC transporter, membrane spanning protein (zinc).
  
  
 
0.481
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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