STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sitBABC transporter, nucleotide binding/ATPase protein (iron). (300 aa)    
Predicted Functional Partners:
sitD
ABC transporter, membrane spanning protein (iron transport).
 
 0.996
sitC
ABC transporter, membrane spanning protein (iron).
 
 0.996
sitA
ABC transporter, substrate binding protein (iron); Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.996
Atu3178
ABC transporter, substrate binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.902
Atu3179
ABC transporter, membrane spanning protein.
 
 
 0.862
znuB
ABC transporter, membrane spanning protein (zinc).
 
 
 0.766
znuA
ABC transporter, substrate binding protein (zinc).
 
  
 0.745
Atu1049
Conserved hypothetical protein.
 
  
 0.703
fur
Ferric uptake regulator; Belongs to the Fur family.
 
  
 0.447
Atu4467
Conserved hypothetical protein.
       0.441
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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