STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrAMultidrug resistance efflux pump. (432 aa)    
Predicted Functional Partners:
emrB
MFS permease; Belongs to the major facilitator superfamily.
 
 
 0.963
nodT
Nodulation protein T precursor.
 
 
 0.818
Atu1086
MFS permease.
 
 
 0.774
Atu4477
Transcriptional regulator, TetR family.
 
   
 0.723
copB
Copper tolerance protein.
  
 
 0.582
Atu2577
ABC transporter, nucleotide binding/ATPase protein.
  
 
 0.580
Atu1817
Conserved hypothetical protein.
  
  
 0.569
Atu0621
MFS permease.
 
 
 0.537
Atu0838
MFS permease.
 
 
 0.535
prsE2
HlyD family secretion protein.
      
 0.478
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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