Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (436 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
 
 
 0.995
mtlK
Mannitol 2-dehydrogenase.
    
 0.939
scrK
Fructokinase.
     
 0.916
Atu4318
Xylitol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family.
     
 0.904
arfA
alpha-L-arabinofuranosidase.
 
  
 0.836
glk
Glucokinase; Belongs to the bacterial glucokinase family.
     
 0.818
xylF
ABC transporter, substrate binding protein (xylose).
 
  
 0.722
Atu4481
Transcriptional regulator, LacI family.
 
   
 0.659
xylH
ABC transporter, membrane spanning protein (xylose); Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.620
lyxK
L-xylulose kinase; Belongs to the FGGY kinase family.
 
  
 0.583
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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